| REFERENCE LIST
COI Diversity in
Other Kingdoms of Life - Protista
Antaramian A, Coria R, Ramirez
J, Gonzalez-Halphen D 1996. The deduced primary structure
of subunit I from cytochrome c oxidase suggests that the genus
Polytomella shares a common mitochondrial origin
with Chlamydomonas. Biochimica et Biophysica Acta
1273: 198-202
Bhattacharya D, Surek B, Rusing
M, Damberger S, Melkonian M 1994. Group I introns are inherited
through common ancestry in the nuclear-encoded rRNA of Zygnematales
(Charophyceae). Proceeding of the National Academy of Sciences,
USA 91: 9916-9920
Burger G, Plante I, Lonergan KM,
Gray MW 1995. The mitochondrial DNA of the amoeboid protozoon,
Acanthamoeba castellani: complete sequence, gene
content and genome organization . Journal of Molecular Biology
245: 522-537
Burger G, Saint-Louis D, Gray MW,
Lang BF 1999. Complete sequence of the mitochondrial DNA of
the red alga Porphyra purpurea: cyanobacterial introns
and shared ancestry of red and green algae. The Plant Cell
11: 1675-1694
Davila-Aponte JA, Huss VAR, Sogin
ML, Cech TR 1991. A self-splicing group I intron in the nuclear
pre-rRNA of the green alga, Ankistrodesmus stipitatus.
Nucleic Acids Research 19: 4429-4436
Ehara M, Hayashi-Ishimaru Y, Inagaki
Y, Ohama T 1997. Use of a deviant mitochondrial genetic code
in yellow-green algae as a landmark for segregating within
the phylum. Journal of Molecular Evolution 45: 119-124
Ehara M, Inagaki Y, Watanabe KI,
Ohama T 2000. Phylogenetic analysis of diatom coxI genes and
implications of a fluctuating GC content on mitochondrial
genetic code evolution. Current Genetics 37: 29-33
Ehara M, Watanabe KI 1998. Distrubution
of the mitochondrial deviant genetic code AUA for methionine
in heterkont algae. Journal of Physiology 34: 1005-1008
Ehara M, Watanabe KI, Ohama T 2000.
Distribution of cognates of group II introns detected in mitochondrial
coxI genes of a diatom and haptophyte. Gene 256: 157-167
Fontaine JM, Goux D, Kloareg B,
Goer SL 1997. The reverse-transcriptase-like proteins encoded
by group II introns in the mitochondrial genome of the brown
alga Pylaiella littoralis belong to two different
lineages which apparently coevolved with the group II ribosyme
lineages. Journal of Molecular Evolution 44: 33-42
Gray MW, Lang BF, Cedergren R,
Golding GB, Lemieux C, Sankoff D, Turmel M, Brossard N, Delage
E, Littlejohn TG, Plante I, Rioux P, Saint-Louis D, Zhu Y,
Burger G 1991. Genome structure and gene content in protist
mitochondrial DNAs. Nucleic Acids Research 26: 865-878
Hayashi-Ishimaru Y, Ehara M, Inagaki
Y, Ohama T 1997. A deviant mitochondrial genetic code in prymnesiophytes
(yellow-algae): UGA codon for tryptophan. Current Genetics
32: 296-299
Horvath A, Berry EA, Huang L, Maslov
DA 2000. Leichmania tarentolae: A parallel isolation
of cytochrom bc1 and cytchrom c oxidase. Experimental Parasitololgy
96: 160-167
Inagaki Y, Ehara M, Watanabe KI,
Hayashi-Ishimaru Y, Ohama T 1998. Directionally evolving genetic
code: the UGA codon from stop to tryptophan in mitochondria.
Journal of Molecular Evolution 47: 378-384
Inagaki Y, Ehara M, Watanabe KI,
Hayashi-Ishimaru Y, Ohama T 1998. Directionally evolving genetic
code: the UGA codon from stop to tryptophan in mitochondria.
Journal of Molecular Evolution 47: 378-384
Ogawa S, Matsuo K, Angata K, Yanagisawa
K, Tanaka Y 1997. Group-I introns in the cytochrome c oxidase
genes of Dictyostelium discoideum: two related ORFs
in one loop of group-I intron, a cox1/2 hybrid gene and an
unusually large cox3 gene. Current Genetics 31: 80-88
Rathore D, Wahl AM, Sullivan M,
McCutchan TF 2001. A phylogenetic comparison of gene trees
constructed from plastid, mitochondrial and genomic DNA of
Plasmodium species. Molecular and Biochemical Parasitology
114: 89-94
Speijer D, Muijsers AO, Dekker
H, Haan A, Breek CKD, Albracht SPJ, Benne R 1996. Purification
and characterization of cytochrome c oxidase from the insect
trypanosomatid Crithidia fasciculata. Molecualr and
Biochemical Parasitology 79: 47-59
Stothard JR, Frame IA, Carrasco
HJ, Miles MA 1998. On the molecular taxonomy of Trypanosoma
cruzi using riboprinting . Parasitology 117: 243-247
Turmel M, Lemieux C, Burger G,
Lang BF, Otis C, Plante I, Gray MW 1999. The complete mitochondrial
DNA sequences of Nephroselmis olivacea and Pedinomonas
minor: two radically different evolutionary patterns
within green algae. The Plant Cell 11: 1717-1729
Van Oppen MJH, Olsen JL, Stam WT
1993. Evidence for independent acquisition of group I introns
in green algae. Molecular Biology and Evolution 10: 1317-1326
Watanabe KI, Ehara M, Ohama T 1998.
Distinctive origins of group I introns found in the coxI genes
of three green algae. Gene 213: 1-7
Winkler M, Kuck U 1991. The group
IIB intron from the green alga Scenedesmus obliquus
mitochondrion: molecular characterization of the in vitro
spilicing products. Current Genetics 20: 495-502
Ziaie Z, Suyama Y 1987. The
cytochrome oxidase subunit I gene of Tetrahymena: a 57 amino
acid NH2-terminal extension and a 108 amino acid insert. Current
Genetics 12: 357-368
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